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Jordan Lab
We are a Computational Biology and Bioinformatics laboratory in the School of Biology at the Georgia Institute of Technology. Our group does research and development on:
Transposable Elements, Epigenomics & Gene Regulation - the influence of transposable elements (TEs) on the structure, function and evolution of eukaryotic genomes. Understanding the relationship between TEs, chromatin structure and gene expression dynamics.
Next Generation Sequence Analysis - the development and application of algorithms for the functional genomic analysis of high-throughput sequence data: genome assembly, ChIP-seq, RNA-seq.
Computational Genomics & Public Health - the development and application of computational tools for the analysis of microbial genome sequences. Creation of web-enabled programs for molecular epidemiology and comparative genomics.
NBase
NBase is the current version of the genome browser which includes GBrowse, SNP Tool, and Search tools.
CGPBase is the new implementation Talk:Pipeline/CGPBase
Pipeline
The genome assembly, prediction, and annotation procedure has been automated.
MGIP
MGIP is epidemiological software to aid in meningococcal surveillance, and in the future, other organisms.
Course: Computational Genomics
The compgenomics class was started in 2008 by Dr. I. King Jordan. The above link leads to an archive of the 2008 class. The subsequent classes can be found at their respective sites:
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